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http://annalsofrscb.ro 1561

An investigation of SORT1 gene polymorphism with lipid profile biomarkers in Iraqi patients having Myocardial infarction.

Batool Luay*1, Mufeed Jalil Ewadh2 Shokry Faaz Alsaad3

1College;of Health and Medical Technology, Al-Zahraa University for Women, Kerbala, Iraq.

2,3 College of medicine, University of Babylon, Hilla, Iraq.

[email protected] Abstract:

Introduction:

Myocardial infarction (MI) is one of the greatest frequent encounter causes for hospital admittance besides is common see in all populaces worldwide. The limit researches are carry out in Kerbala Province populace, and we object to examine the molecular relationship of single nucleotide polymorphism (SNPs) recognized done GWAS investigates in Myocardial infarction patient groups in Karbala Province populace.

Method: The case-control study design. This study involved (140) samples collected from patients with MI and control group. The blood five ml samples determination by collect in two changed tubes, besides 3mL of coagulate blood determination to use for biochemical analysis (lipid tests) besides 2mL determinate to use for molecular (DNA) analysis. Genomic DNA determinate extract by collect blood sample, besides specific primer can be design for chose SNP (SORT1-rs464218 polymorphisms) beside use Genotype technique is Allele specific-PCR.

Results: The rs464218 polymorphisms was significant associate with genotype in Odd Ratio (O.R.) analysis (p < 0.05) in Heterozygous genotype (GA) of SORT1 gene. The correlate in the middle of lipid profile, BMI and genotype have shown non association of rs464218 variant by combine parameters, the ANOVA analyse is carry out by research effect of (rs464218) variant on variance parameter. The analyse distribute of the variable around various genotype in select polymorphism. BMI was non-association with any of genotype in (rs464218) variant. Also the non-association in result with TG, TC, HDL-C, LDL-C, VLDL-C in (rs464218) SORT1 gene (p=0.255), (p=0.31), (p=0.187) (p=0.416) and (0.213) were non-significantly associated variants respectively.

Conclusion: The outcomes of this research confirm the (rs464218) polymorphism in SORT1 gene SNP is associated in Kerbala Province populaces.

Keywords: Genome-wide association studies, Myocardial infarction, SORT1, genetics.

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http://annalsofrscb.ro 1562 Introduction

Coronary artery diseases (CAD) has become record widespread serious global burden of morbidity and mortality in industrialized countries. Accord to Third research via World Health Organization, 12 million individuals death every year of CVD worldwide, and it is estimated that via 2025, cardiovascular death on worldwide measure determination probable exceed the all main diseases groups, containing infection, trauma, and cancer (World Health Organization; Nascimento et al., 2019). Atherosclerosis is considered main cause of acute myocardial infarction (AMI), in which 70% of fatal events among patients with AMI are caused by occlusion from atherosclerotic plaques (Bhatt et al., 2006).Atherosclerosis is considered via vascular inflammation, endothelial dysfunction, besides formation of atherosclerotic plaque. This buildup of atherosclerotic plaque causes an inadequate supply of oxygen to myocardial tissue, leading to myocardial hypoxia.

Consequently, the plaque rupture and atherothrombosis cause further narrowing of coronary arteries and almost occluding the blood flow, leading to fatal acute coronary syndromes. The most evident manifestation of CAD is the AMI (Scheen, 2018).

In Iraq, the epidemiological statistics on prevalence besides incidence of CAD as evidence of awareness are limited due to the unavailability of indication based national guideline for organization of cardiovascular disease (Traina et al., 2017). The prior study in 2014, cardiovascular disease mortality was estimated to account for 33% in Iraq (GBD 2015 Eastern Mediterranean Region Cardiovascular Disease Collaborators, 2018).

Sortilin (SORT1 gene) was be recognized done GWAS researches, it seems arranged chromosome 1p13.3 region (Hubáček, 2016). SORT1 gene is encode for sorting protein that performance an central role in uptake of lipid (Arvind et al., 2014). SORT1 SNPs are among first that are associate by together LDL -C level besides CHD in GWASs (Samani et al., 2007), Risk of MI is decreased via (40%) in homozygous carrier compare to non- carriers (Kathiresan et al., 2008).

The SORT1 gene encode sortiline, its was identified to be there a multi-ligand cells surfaces receptors besides intra-cellular traffick, its theorized the sortiline may possibly involve in traffick besides pre secretory degradate of VLDL-C in hepatocyte to decrease VLDL-C secrete and eventual circulate LDL-C level. The over expression of SORT1 gene is show to decrease VLDL-C, TG besides apo-lipoprotein B secrete in mouse, shown in (Figure 1a) (Musunuru et al., 2010).

The difference to expectation since human genetic finding, the SORT1 gene hit mice by expression of abnormal sortiline protein go across by LDL-R lacking contextual exhibit decrease LDL-C besides decrease VLDL-C secrete (Kjolby et al., 2010). Additional

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http://annalsofrscb.ro 1563 supported for the result move toward from one more hit typical with whole absence the SORT1 gene (Zeng, Racicott and Morales, 2009), which likewise confirmed decrease VLDL-C secret (Strong et al., 2012). The results suggested that, paradoxical, together hepatic over expression besides whole insufficiency of SORT1 gene decrease VLDL-C secreted in mouse. The recent be present confirmed the sortiline bind LDL-C direct besides is a physiological related cells surface LDL-C receptor in liver (Strong et al., 2012). The recent research prove the sortiline is involve in LDL-C uptake via macrophage, shown in (Figure 1b) (Patel et al., 2015). It is notable the sortiline was chief recognized through GWASs as taking a role in LDL-C metabolism (Orho-Melander, 2015).

Figure (1) :- Identificational of sortiline1 via GWAS in human (Rajpathak et al., 2009; Musunuru et al., 2010; Preiss et al., 2011; Orho-Melander, 2015; Patel et al., 2015)

Methods:

The case-control study design. This study involved (140) samples collected from patients with MI and control group. The opt individual parity of 70 patients besides 70 control groups. All samples were collected from June 2019 till February 2020. They were selected from coronary care unit (CCU) department of Al-Imam Al-Hussein medical teaching City in Karbala Province. The blood five ml samples must be collected in

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http://annalsofrscb.ro 1564 twofold different tubes, besides 3mL of coagulate blood use for lipid tests (biochemical analysis) besides two mL use for DNA tests (molecular analysis). Genomic DNA was extract by collect blood sample, besides specific primer was design for opt SNP (SORT1 gene -rs464218 polymorphisms) besides Allele specific-PCR.

Primer of amplificated product was examined SORT1 gene was amplified via use specific primer, are shown in table (1).

Table (1): Genotype technique, Primers Sequence, Annealing Temperature (AT) and Product Size of SORT1 Gene.

SORT1 Gene (C>T) or (G>A) SNPs rs464218

Forward primer (C allele) CCACTTCTGTGTGTTCTGCATTGC Forward primer (T allele) CCACTTCTGTGTGTTCTGCATAGT Reverse primer

(common allele)

TGTGTGAGGAGCTGGTGTGCAGTG Product size

Annealing Temperature (AT) Genotype technique

218 base pair (bp) 64°C

Allele Specific-Pcr

Results:

During this study process, 70 cases of Myocardial infarction Patients and 70 control groups was enrolled to study design (case-control) study. The mean ± SD age of patients besides control groups 58.4 ±10.7, and 58.771 ±10.9 and t-test were found to be 0.83, there was non-significant difference in age between control and MI patient groups. This age matching helps to eliminate differences in parameters. However, the clinical details were non-significantly difference between patients besides control groups on gender, BMI and TC, TG, LDL-C, VLDL-C parameters (p > 0.05); While the highly significant difference association with HDL-C between control and MI patient groups the p-value (p

< 0.01) was shown in table (2).

Table (2): Demographic characteristics between Myocardial infarction Patients groups and Control groups.

Parameters Myocardial infarction Patients

groups

Control groups P value

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http://annalsofrscb.ro 1565

Gender(Male:female) 46/24 35/35 0.06

Age ( years ) 58.4 ±10.7 58.771 ±10.9 0.83 BMI ( Kg / m2 ) 27.775±4.779 28.327±3.3296 0.5666 HDL-C (mg/dl) 34.743±7.0919 39.752±8.1156 0.000*

TG (mg/dl) 172±61.051 170.21±91.05459 0.89278 TC (mg/dl) 159.72±27.807 153.35±38.38460 0.26801 LDL-C (mg/dl) 87.985±30.4039 83.877±28.1667 0.40832 VLDL-C (mg/dl) 33.417±13.345 34.042±18.2109 0.81708

*HS: Highly significant difference (P ˂ 0.01).

significant between Myocardial infarction Patients groups and Control groups.

TC:Total cholesterol, TG:Triglycerides, SD:standard deviation, MI:Myocardial infarction, BMI:Body mass index.

Genotyping of SORT1 gene there was GG polymorphism of SORT1 gene is determine via allele specific-Pcr. The Pcr process was conducted used for each sample. Result of the first process which was conducted to determine the G allele and A allele, resulted in one bands for each allele, when visualized on agarose gel electrophoresis. These bands was 218 base pair (bp) represent presence of G allele or A allele or together GA, while absence of G allele (G>A) was assumed when 218 bp band was visualized in Homozygous mutation genotype, as shown in figure (2).

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http://annalsofrscb.ro 1566 Figure (2): The electrophoretic pattern, PCR product of SORT1 Gene (G>A) SNP in (1.5%) agarose gel electrophoresis, time (40 minute), voltage (55 V) besides 5μL of AS-Pcr product loaded in each well, where the lanes are:

Lane M: DNA size marker Ladder 100 bp.

Lane 2,4, 5,6,8: PCR product (one band 218 bp).

Lane 1 and 2 (Sample 1): no band (218 bp) for G and one band for A are homozygous genotype (AA).

Lane 3 and 4 (Sample 2): no band (218 bp) for G and one band for A are homozygous genotype (AA).

Lane 5 and 6 (Sample 3): Two bands (218 bp) for G and A, are heterozygous genotype (GA).

Lane 7 and 8 (Sample 4): no band (218 bp) for G and one band for A are homozygous genotype (AA).

The association of Genotype, in this research, rs464218 polymorphism was carried out between the cases Myocardial infarction Patients groups and controls. Variant appear in HWE in together groups. Allele besides Genotype frequency of patients and control. GG, GA and AA are three genotype variant were detect in rs464218 (SORT1) gene.

Genotypes distribution between Myocardial infarction Patients and healthy control groups, From documented in the table (3), can express the homozygous mutation genotype AA was recurrent in MI patient group, also the homozygouse mutation genotype AA was more abundant genotype in the control groups.

Table (3): Genotyping of SORT1 gene polymorphism with allele frequency in Myocardial infarction Patients and Control groups.

Groups Genotype of SORT1 Total Variant Allele

frequency

GG GA AA G A

Patients with MI

9 22 39 70 0.29 0.71

Control 12 0 58 70 0.17 0.83

Total 21 22 97 140 - -

GG: Wild Homozygous genotype, GA: Heterozygous genotype and AA:

Homozygous mutation genotype

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http://annalsofrscb.ro 1567 The genetic influence was calculated, it characterizes the influence to detect significantly difference of (p<0.05) for SORT1 gene. In general, these results are caused by relative small sample size (Ellis, 2010). Genotyping frequency of the SORT1 gene was consistents by HWE (p > 0.05) both patients with MI patient groups. However, it is deviate by HWE (p<0.05) in healthy control groups, as documented in table (4).

Deviation by HWE might be attribute to small sample size (Zintzaras, 2010).

The results not consistent with HWE, when the (p<0.05). The instruction to estimate the significantly of the findings, Chi-squared (X2) value is use to examine Odds Ratio (OR) and significantly of genotype and variant allele frequencies, as documented in tables (4), (5).

Table (4): The observed genotype frequencies are consistent with results of Hardy Weinberg Equilibrium and Variant allele frequency for SORT1 Gene (G>A) SNP genotypes in Patients with MI and the Controls Groups.

Groups with SORT1

Gene

Chi-squared value (X2)

P-value Variant allele frequency

Patient with MI

3.703 0.0543 0.71

Control 70 0.000 0.83

The results consistent with HWE p value >0.05, X2: Chi-squar.

Relevance of SORT1 Gene (G>A) Polymorphism withMyocardial infarction Patients and the Controls Groups: The genotypes distribution and frequency of SORT1 gene (G>A) SNP as shown in Table (9). The analysis of results indicated that the SORT1 gene (G>A) SNP genotype frequencies of wild homozygous genotype (GG) was 9 (12.9%), heterozygous genotype (GA) was 22 (31.4%) and homozygous mutation genotype (AA) was 39 (55.7%) in MI patients groups and 12 (17.1%), 0.5 (0.7%) and 58 (82.9%) in controls groups.

The heterozygous genotype (GA) of SORT1 gene (G>A) SNP was found to be significantly higher (OR=0.0169, CI 95% = [0.0009-0.315], P=0.006) the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference. The homozygous mutation genotype (AA) of SORT1 gene (G>A) SNP was found to be non-significantly higher (OR=1.115, CI 95% = [0.429-2.898], P=0.823) the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference. As documented in table (5).

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http://annalsofrscb.ro 1568 Table (5):- Genotypes Distribution, Odd ratio, confidence interval (CI 95%) and Frequency of SORT1 Gene (G>A) SNP in Myocardial infarction Patients and the Controls Groups.

Genotype of SORT1

MI patient Control O.R. 95% CI p-value Wild

Homozygous genotype

(GG)

9 (12.9%)

12 (17.1%) Reference Reference Reference

Heterozygous genotype

(GA)

22 (31.4%) 0.5 (0.7%) 0.0169 0.0009- 0.315

0.006*

Homozygous mutation genotype

(AA)

39 (55.7%) 58 (82.9%) 1.115 0.429-2.898 0.823

Total 70 (100%) 70 (100%) - - -

* Significantly difference (P ˂ 0.05).

In this research, heterozygous genotype (GA) SORT1 gene (G>A) SNP was result significantly difference (P=0.006) higher the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference, while the homozygous mutation genotype (AA) of SORT1 gene (G>A) SNP was result non- significant (P=0.823) higher the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference, its documented in table (5).

Table (6): Correlate between lipid profile, BMI and genotyping (Mean±SD) involve in the research.

SORT1 gene (rs464218)

GG GA AA P value

Number 9(12.86%) 22(31.43%) 39 (55.7%) _

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http://annalsofrscb.ro 1569 BMI (kg/m2) 26.9097±3.048 27.238±3.991 28.42±5.478 0.558 HDL-C (mg/dl) 32.1625±6.572 33.25±7.709 36.0762±6.707 0.187 TG (mg/dl) 142.55±40.984 167.248±82.507 180.5997±49.077 0.255 TC (mg/dl) 155.085±13.825 153.248±28.284 164.149±29.315 0.314 LDL-C (mg/dl) 94.4125±20.195 82.614±30.858 91.953±28.843 0.416

VLDL-C (mg/dl)

28.51±8.197 31.929±17.612 36.11995±9.815 0.213

The associate of rs464218 variant by combine parameters, the ANOVA analyse is carry out by research effect of (rs464218) variant on variance parameter. The analyse distribute of the variable around various genotype in select polymorphism. BMI was non- association with any of genotype in (rs464218) variant. Also the non-association in result with TG, TC, HDL-C, LDL-C, VLDL-C in (rs464218) SORT1 gene (p=0.255), (p=0.31), (p=0.187) (p=0.416) and (0.213) were non-significantly associated variants respectively.

The whole statistics of ANOVA analysed was shown in table (6).

Discussion:

The purpose of current research was to investigated confirm variant by GWAS study with Myocardial infarction patients and the controls groups in Iraqi population. As per the literature, this will be the initial study performed in the Iraqi populace. The genotypes were found to be non-associated with BMI, TC, TG, LDL-C, HDL-C and VLDL-C, where the correlation P-value was less than 0.05. The MI prevalence showed an increase and proved to be second reason for disability, it also proved to be fourth reason for death within the worldwide populace. But, problem with great amount is divided in developing countries for the reason that of greater populaces. The MI as a complex disease is extremely complicated to remove the contribution of the environmental and genetic effects. The previous researches showed the associations of genetics with MI. There are small number of genetic researches undertaken in Iraqi with MI. The determined the rs464218 polymorphisms per male and female in patient and control groups.

The genetics contained in metabolism and synthesis of lipids in serum levels were intensely studied because of their quantifiability from serum and clinical significance (Alharbi et al., 2018).

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http://annalsofrscb.ro 1570 The rs464218 polymorphisms was significant associate with genotype in Odd Ratio (O.R.) analysis (p < 0.05) in Heterozygous genotype (GA) of SORT1 gene. The correlate in the middle of lipid profile, BMI and genotype have shown non association of rs464218 variant by combine parameters. The ANOVA analyse is carry out by research effect of (rs464218) variant on variance parameter. The analyse distribute of the variable around various genotype in select polymorphism. BMI was non-association with any of genotype in (rs464218) variant (p=0.558). Also the non-association in result with TG, TC, HDL-C, LDL-C, VLDL-C in (rs464218) SORT1 gene (p=0.255), (p=0.31), (p=0.187) (p=0.416) and (0.213) were non-significantly associated variants correspondingly. These statistic with (rs464218) polymorphism are in agreement with previous research with (Alharbi et al., 2018) in the correlation of parameter between lipid profile, BMI and genotype, but differ in TG, which is not associated with genotype in this research.

Presently, GWAS reported thousands of SNPs related with human disease have showed achievements in explaining pathophysiological mechanisms with genetic effect (Traylor et al., 2017; Zheng et al., 2017) The MI is affected through genetics and environmental factors is considered to be the fourth leading cause for death around the world (Terni et al., 2015). Meta analysis, Genome wide linkage, GWAS studies concluded that variances of genetic are accountable for MI varied risk (Zhang et al., 2017).

In Iraq, the epidemiological statistics on prevalence and incidence of CAD as evidence of awareness are limited due to the unavailability of suggestion founded national guideline for administration of cardiovascular disease (Traina et al., 2017). The prior study in 2014, cardiovascular disease mortality was estimated to account for 33% in Iraq (GBD 2015 Eastern Mediterranean Region Cardiovascular Disease Collaborators, 2018).

Numerous researches have recognized the relative between atherosclerosis and MI (Bhatt et al., 2006) (Scheen, 2018).

The MI identify interruption supply of blood to a portion of heart, it is continually because of development of occlusive thrombus at position of erosion or rupture of an athermanous plague in coronaries artery affecting lacking handling infarct correlated arteries residues always blocked in (30%) of patient and heart cells to death (Boon, 2006).

The previous research via (Musunuru et al., 2010) documented genetic relative associated using LDL-R level action combinding of shifting expression and a main transcription factor of SORT1 gene included in intracellular protein transport. The SORT1 gene (rs464218) polymorphism has been recognized via GWAS in East Asian, Europe, Southern Asian, Africa Americans and Middle Eastern Asian populaces (Ozaki et al., 2002; Consortium, 2009, 2011; Gudbjartsson et al., 2009; Saade et al., 2011; Wang et al.,

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http://annalsofrscb.ro 1571 2011; Buyske et al., 2012). The acquired data with (rs464218) polymorphism are in association with researches undertaken by: (Jeemon et al., 2011; Zhou et al., 2015;

Alharbi et al., 2018) in heterozygous genotype (GA) in SORT1 gene and the difference in correlation TG, which was not associated with genotype in this research, this might be related to the ethnicities.

In this research, heterozygous genotype (GA) in SORT1 gene (G>A) SNP was result significantly difference (P=0.006) higher the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference, while the homozygous mutation genotype (AA) of SORT1 gene (G>A) SNP was result non- significant (P=0.823) higher the risk of MI with respect to those of the wild homozygous genotype (GG) of SORT1 gene (G>A) SNP as reference, its documented the . The data with (rs464218) polymorphism are in association with (Alharbi et al., 2018) researches, but be different in heterozygous genotype (GA) in SORT1 gene, and this might be because the ethnicities

Conclusion:-

The research confirms the SORT1 variant that was associated in Iraqi populaces. The present research were in association with previous research data shown through meta- analysis association and GWAS. The worldwide ethnic populace research must be achieved to cancel in all ethnicities in human hereditary diseases.

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http://annalsofrscb.ro 1574 Zheng, J. et al. (2017) ‘HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics’, Bioinformatics. Oxford University Press, 33(1), pp. 79–86.

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